A B C D E F G H I J L M N O P R S T U V W _

A

accessdir - Variable in class eu.scape_project.xa.tw.toolspec.Dataexchange

accessurl - Variable in class eu.scape_project.xa.tw.toolspec.Dataexchange

action - Variable in class eu.scape_project.pit.invoke.Processor

Action - Class in eu.scape_project.pit.tools

An Action may be backed by: - A command line invocation.

Action() - Constructor for class eu.scape_project.pit.tools.Action

addDigest(JavaDigestValue) - Method in class eu.scape_project.core.model.ByteStreamInfo

ALGID_URI_PREFIX - Static variable in enum eu.scape_project.core.api.DigestValue.DigestAlgorithm

SCAPE algorithm id URI scheme prefix

ALGID_URI_PREFIX - Static variable in class eu.scape_project.core.Constants

SCAPE algorithm id URI scheme prefix

B

byteDigestToHexString(byte[]) - Static method in class eu.scape_project.core.utils.DigestUtilities

ByteStreamCharacterisation - Class in eu.scape_project.services.characterise

Simple characterisation service for byte streams.

ByteStreamCharacterisation() - Constructor for class eu.scape_project.services.characterise.ByteStreamCharacterisation

ByteStreamInfo - Class in eu.scape_project.core.model

C

characterise(DigitalObject, List<Parameter>) - Method in class eu.planets_project.clients.ws.CharacteriseWrapper

characterise(InputStream) - Method in class eu.scape_project.services.characterise.ByteStreamCharacterisation

CharacteriseWrapper - Class in eu.planets_project.clients.ws

This is a wrapper class that upgrades all supported Identify service interfaces to the same level.

CharacteriseWrapper(URL) - Constructor for class eu.planets_project.clients.ws.CharacteriseWrapper

CharacteriseWrapper(PlanetsServiceExplorer) - Constructor for class eu.planets_project.clients.ws.CharacteriseWrapper

characters(char[], int, int) - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

clireplacement - Variable in class eu.scape_project.xa.tw.toolspec.Default

command - Variable in class eu.scape_project.xa.tw.toolspec.Operation

CommandLineProcess - Class in eu.scape_project.pit.proc

This class defines a command which can be executed on the command line.

CommandLineProcess(String, HashMap<String, String>, boolean) - Constructor for class eu.scape_project.pit.proc.CommandLineProcess

CommandLineProcess(List<String>) - Constructor for class eu.scape_project.pit.proc.CommandLineProcess

Construct from a list of string commands

CommandNotFoundException - Exception in eu.scape_project.pit.invoke

CommandNotFoundException() - Constructor for exception eu.scape_project.pit.invoke.CommandNotFoundException

CommandNotFoundException(String, Throwable) - Constructor for exception eu.scape_project.pit.invoke.CommandNotFoundException

CommandNotFoundException(String) - Constructor for exception eu.scape_project.pit.invoke.CommandNotFoundException

CommandNotFoundException(Throwable) - Constructor for exception eu.scape_project.pit.invoke.CommandNotFoundException

compare(CharacteriseResult, CharacteriseResult, List<Parameter>) - Method in class eu.planets_project.clients.ws.ComparePropertiesWrapper

compare(DigitalObject, DigitalObject, List<Parameter>) - Method in class eu.planets_project.clients.ws.CompareWrapper

compare(String, URL, URL) - Method in class eu.scape_project.pit.invoke.PitInvoker

ComparePropertiesWrapper - Class in eu.planets_project.clients.ws

This is a wrapper class that upgrades all supported Identify service interfaces to the same level.

ComparePropertiesWrapper(URL) - Constructor for class eu.planets_project.clients.ws.ComparePropertiesWrapper

ComparePropertiesWrapper(PlanetsServiceExplorer) - Constructor for class eu.planets_project.clients.ws.ComparePropertiesWrapper

CompareWrapper - Class in eu.planets_project.clients.ws

This is a wrapper class that upgrades all supported Identify service interfaces to the same level.

CompareWrapper(URL) - Constructor for class eu.planets_project.clients.ws.CompareWrapper

CompareWrapper(PlanetsServiceExplorer) - Constructor for class eu.planets_project.clients.ws.CompareWrapper

Constants - Class in eu.scape_project.core

Static class meant as a home for project wide constants.

content - Variable in class eu.scape_project.xa.tw.toolspec.Format

content - Variable in class eu.scape_project.xa.tw.toolspec.Property

contextpathprefix - Variable in class eu.scape_project.xa.tw.toolspec.Service

convert(DigitalObject) - Method in class eu.planets_project.clients.ws.CompareWrapper

Convert - Class in eu.scape_project.pit.invoke

Convert(ToolSpec, Action) - Constructor for class eu.scape_project.pit.invoke.Convert

convert(File, File) - Method in class eu.scape_project.pit.invoke.Convert

convertConfig(DigitalObject) - Method in class eu.planets_project.clients.ws.ComparePropertiesWrapper

convertInput(DigitalObject) - Method in class eu.planets_project.clients.ws.ComparePropertiesWrapper

createDigestSet(Set<DigestValue.DigestAlgorithm>, InputStream) - Static method in class eu.scape_project.core.model.JavaDigestValue

createFormat() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of Format

createInOut() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of InOut

createInOutAttrs() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of InOutAttrs

createInput() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of Input

createInputs() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of Inputs

createInstallation() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of Installation

createLicense() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of License

createOperatingSystemDependency() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of OperatingSystemDependency

createOperation() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of Operation

createOperations() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of Operations

createOutput() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of Output

createOutputs() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of Outputs

createParameter() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of Parameter

createProcessor(String, String) - Static method in class eu.scape_project.pit.invoke.Processor

Factory method to create a processor from toolspec and action identifiers,

createProperties() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of Properties

createProperty() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of Property

createServiceObject(Class<T>, URL) - Static method in class eu.planets_project.clients.ws.DiscoveryUtils

A generic method that can be used as a short-cut for instanciating Planets services.

createStdin() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of Stdin

createStdout() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of Stdout

createTool() - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of Tool

createTool(Tool) - Method in class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create an instance of JAXBElement<Tool>}

createView(List<DigitalObject>, List<Parameter>) - Method in class eu.planets_project.clients.ws.CreateViewWrapper

CreateViewWrapper - Class in eu.planets_project.clients.ws

This is a wrapper class that upgrades all supported Identify service interfaces to the same level.

CreateViewWrapper(URL) - Constructor for class eu.planets_project.clients.ws.CreateViewWrapper

CreateViewWrapper(PlanetsServiceExplorer) - Constructor for class eu.planets_project.clients.ws.CreateViewWrapper

createWrapper(URL) - Static method in class eu.planets_project.clients.ws.MigrateWrapper

D

Dataexchange - Class in eu.scape_project.xa.tw.toolspec

Java class for anonymous complex type.

Dataexchange() - Constructor for class eu.scape_project.xa.tw.toolspec.Dataexchange

dataexchange - Variable in class eu.scape_project.xa.tw.toolspec.Deployment

Default - Class in eu.scape_project.xa.tw.toolspec

Java class for anonymous complex type.

Default() - Constructor for class eu.scape_project.xa.tw.toolspec.Default

defaultValue - Variable in class eu.scape_project.xa.tw.toolspec.Input

defaultValue - Variable in class eu.scape_project.xa.tw.toolspec.Parameter

dependency - Variable in class eu.scape_project.xa.tw.toolspec.Installation

DependencyFormat - Enum in eu.scape_project.xa.tw.toolspec

Java class for DependencyFormat.

Deployment - Class in eu.scape_project.xa.tw.toolspec

Java class for anonymous complex type.

Deployment() - Constructor for class eu.scape_project.xa.tw.toolspec.Deployment

deployment - Variable in class eu.scape_project.xa.tw.toolspec.Deployments

Deployments - Class in eu.scape_project.xa.tw.toolspec

Java class for anonymous complex type.

Deployments() - Constructor for class eu.scape_project.xa.tw.toolspec.Deployments

deployments - Variable in class eu.scape_project.xa.tw.toolspec.Toolspec

Deployref - Class in eu.scape_project.xa.tw.toolspec

Java class for anonymous complex type.

Deployref() - Constructor for class eu.scape_project.xa.tw.toolspec.Deployref

deployref - Variable in class eu.scape_project.xa.tw.toolspec.Deployto

Deployto - Class in eu.scape_project.xa.tw.toolspec

Java class for anonymous complex type.

Deployto() - Constructor for class eu.scape_project.xa.tw.toolspec.Deployto

deployto - Variable in class eu.scape_project.xa.tw.toolspec.Service

describe() - Method in class eu.planets_project.clients.ws.CharacteriseWrapper

describe() - Method in class eu.planets_project.clients.ws.ComparePropertiesWrapper

describe() - Method in class eu.planets_project.clients.ws.CompareWrapper

describe() - Method in class eu.planets_project.clients.ws.CreateViewWrapper

describe() - Method in class eu.planets_project.clients.ws.IdentifyWrapper

describe() - Method in class eu.planets_project.clients.ws.MigrateWrapper

description - Variable in class eu.scape_project.xa.tw.toolspec.InOut

description - Variable in class eu.scape_project.xa.tw.toolspec.Operation

description - Variable in class eu.scape_project.xa.tw.toolspec.Service

DigestUtilities - Class in eu.scape_project.core.utils

DigestValue - Interface in eu.scape_project.core.api

DigestValue.DigestAlgorithm - Enum in eu.scape_project.core.api

Enum to identify the java supported digest algorithms.

DiscoveryUtils - Class in eu.planets_project.clients.ws

DiscoveryUtils() - Constructor for class eu.planets_project.clients.ws.DiscoveryUtils

doAction(String, String) - Method in class eu.planets_project.clients.ws.CreateViewWrapper

E

endElement(String, String, String) - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

EndpointUtils - Class in eu.planets_project.clients.ws

EndpointUtils() - Constructor for class eu.planets_project.clients.ws.EndpointUtils

equals(Object) - Method in class eu.scape_project.core.model.ByteStreamInfo

equals(Object) - Method in class eu.scape_project.core.model.JavaDigestValue

eu.planets_project.clients.ws - package eu.planets_project.clients.ws

Service client wrapper classes The purpose of these classes it to make it easier to write a remote service client.

eu.planets_project.ifr.core.servreg.utils.client - package eu.planets_project.ifr.core.servreg.utils.client

eu.scape_project.core - package eu.scape_project.core

eu.scape_project.core.api - package eu.scape_project.core.api

eu.scape_project.core.model - package eu.scape_project.core.model

eu.scape_project.core.utils - package eu.scape_project.core.utils

eu.scape_project.pc.cc - package eu.scape_project.pc.cc

eu.scape_project.pit - package eu.scape_project.pit

eu.scape_project.pit.actions - package eu.scape_project.pit.actions

eu.scape_project.pit.invoke - package eu.scape_project.pit.invoke

eu.scape_project.pit.proc - package eu.scape_project.pit.proc

eu.scape_project.pit.tools - package eu.scape_project.pit.tools

eu.scape_project.pit.util - package eu.scape_project.pit.util

eu.scape_project.services.characterise - package eu.scape_project.services.characterise

eu.scape_project.xa.tw.toolspec - package eu.scape_project.xa.tw.toolspec

execute(HashMap<String, String>) - Method in class eu.scape_project.pit.invoke.Processor

Generic invocation method:

execute(In, HashMap<String, String>) - Method in class eu.scape_project.pit.invoke.Processor

execute(In, In, HashMap<String, String>) - Method in class eu.scape_project.pit.invoke.Processor

execute(In, Out, HashMap<String, String>) - Method in class eu.scape_project.pit.invoke.Processor

execute() - Method in class eu.scape_project.pit.proc.CommandLineProcess

Execute process withouth further input

extension - Variable in class eu.scape_project.xa.tw.toolspec.Output

F

FileUtils - Class in eu.scape_project.pit.util

Some file utilities used by the client and service.

findTool(ToolSpec, String) - Static method in class eu.scape_project.pit.invoke.Processor

Format - Class in eu.scape_project.xa.tw.toolspec

Java class for Format complex type.

Format() - Constructor for class eu.scape_project.xa.tw.toolspec.Format

format - Variable in class eu.scape_project.xa.tw.toolspec.InOut

format - Variable in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

fromInputStream(InputStream) - Static method in class eu.scape_project.pit.tools.ToolSpec

Deserializes a ToolSpec from an XML stream

fromValue(String) - Static method in enum eu.scape_project.xa.tw.toolspec.DependencyFormat

fromValue(String) - Static method in enum eu.scape_project.xa.tw.toolspec.LicenseType

fromValue(String) - Static method in enum eu.scape_project.xa.tw.toolspec.OperatingSystemName

G

getAccessdir() - Method in class eu.scape_project.xa.tw.toolspec.Dataexchange

Gets the value of the accessdir property.

getAccessurl() - Method in class eu.scape_project.xa.tw.toolspec.Dataexchange

Gets the value of the accessurl property.

getActions() - Method in class eu.scape_project.pit.tools.ToolSpec

getAlgorithmId() - Method in interface eu.scape_project.core.api.DigestValue

getAlgorithmId() - Method in class eu.scape_project.core.model.JavaDigestValue

getBitsPerComponent() - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

getClireplacement() - Method in class eu.scape_project.xa.tw.toolspec.Default

Gets the value of the clireplacement property.

getCode() - Method in class eu.scape_project.pit.proc.CommandLineProcess

getCode() - Method in class eu.scape_project.pit.proc.ProcessRunner

Get process return code

getColourSpaceName() - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

getCommand() - Method in class eu.scape_project.pit.proc.CommandLineProcess

Get the command string list which can be used by the Process builder object.

getCommand() - Method in class eu.scape_project.pit.tools.Action

getCommand() - Method in class eu.scape_project.xa.tw.toolspec.Operation

Gets the value of the command property.

getCompressionRatio() - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

getCompressionType() - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

getContent() - Method in class eu.scape_project.xa.tw.toolspec.Format

Gets the value of the content property.

getContent() - Method in class eu.scape_project.xa.tw.toolspec.Property

Gets the value of the content property.

getContextpathprefix() - Method in class eu.scape_project.xa.tw.toolspec.Service

Gets the value of the contextpathprefix property.

getDataexchange() - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Gets the value of the dataexchange property.

getDefault() - Method in class eu.scape_project.pit.tools.Input

getDefaultValue() - Method in class eu.scape_project.xa.tw.toolspec.Input

Gets the value of the defaultValue property.

getDefaultValue() - Method in class eu.scape_project.xa.tw.toolspec.Parameter

Gets the value of the defaultValue property.

getDependency() - Method in class eu.scape_project.xa.tw.toolspec.Installation

Gets the value of the dependency property.

getDeployment() - Method in class eu.scape_project.xa.tw.toolspec.Deployments

Gets the value of the deployment property.

getDeployments() - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Gets the value of the deployments property.

getDeployref() - Method in class eu.scape_project.xa.tw.toolspec.Deployto

Gets the value of the deployref property.

getDeployto() - Method in class eu.scape_project.xa.tw.toolspec.Service

Gets the value of the deployto property.

getDescription() - Method in class eu.scape_project.xa.tw.toolspec.InOut

Gets the value of the description property.

getDescription() - Method in class eu.scape_project.xa.tw.toolspec.Operation

Gets the value of the description property.

getDescription() - Method in class eu.scape_project.xa.tw.toolspec.Service

Gets the value of the description property.

getDigest() - Method in interface eu.scape_project.core.api.DigestValue

getDigest() - Method in class eu.scape_project.core.model.JavaDigestValue

getDigests() - Method in class eu.scape_project.core.model.ByteStreamInfo

getElementsAsStringArray() - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

Get the properties as a String array for quick writing to CSV file.

getEnv() - Method in class eu.scape_project.pit.tools.ToolSpec

getErrInputStream() - Method in class eu.scape_project.pit.proc.ProcessRunner

Get error stream of the process

getExtension() - Method in class eu.scape_project.xa.tw.toolspec.Output

Gets the value of the extension property.

getFile() - Method in class eu.scape_project.pit.invoke.In

getFile() - Method in class eu.scape_project.pit.invoke.Out

getFileExtension(String) - Static method in class eu.scape_project.pit.util.StringUtils

Get file extension

getFilenameFromURI(URI, boolean) - Static method in class eu.scape_project.pit.util.StringUtils

getFileNameFromUrl(URL) - Static method in class eu.scape_project.pit.util.FileUtils

getFormat() - Method in class eu.scape_project.xa.tw.toolspec.InOut

Gets the value of the format property.

getFormat() - Method in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

Gets the value of the format property.

getFormats() - Method in class eu.scape_project.pit.tools.Action

getHexDigest() - Method in interface eu.scape_project.core.api.DigestValue

getHexDigest() - Method in class eu.scape_project.core.model.JavaDigestValue

getHomepage() - Method in class eu.scape_project.xa.tw.toolspec.Tool

Gets the value of the homepage property.

getHomepage() - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Gets the value of the homepage property.

getHorizontalResolution() - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

getHorizontalSize() - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

Get the horizontal (x) size of the image

getHost() - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Gets the value of the host property.

getId() - Method in enum eu.scape_project.core.api.DigestValue.DigestAlgorithm

getId() - Method in class eu.scape_project.pit.tools.Action

getId() - Method in class eu.scape_project.pit.tools.ToolSpec

getId() - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Gets the value of the id property.

getId() - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Gets the value of the id property.

getIdentifier() - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Gets the value of the identifier property.

getInput() - Method in class eu.scape_project.xa.tw.toolspec.Inputs

Gets the value of the input property.

getInputs() - Method in class eu.scape_project.pit.invoke.Processor

getInputs() - Method in class eu.scape_project.pit.tools.Action

getInputs() - Method in class eu.scape_project.pit.tools.Inputs

getInputs() - Method in class eu.scape_project.pit.tools.ToolSpec

getInputs() - Method in class eu.scape_project.xa.tw.toolspec.Operation

Gets the value of the inputs property.

getInputStream() - Method in class eu.scape_project.pit.invoke.In

getInstallation() - Method in class eu.scape_project.pit.tools.Tool

getInstallation() - Method in class eu.scape_project.xa.tw.toolspec.Tool

Gets the value of the installation property.

getInstallation() - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Gets the value of the installation property.

getInstance(String) - Static method in class eu.scape_project.core.model.ByteStreamInfo

getInstance(long, JavaDigestValue) - Static method in class eu.scape_project.core.model.ByteStreamInfo

getInstance(long, JavaDigestValue, String) - Static method in class eu.scape_project.core.model.ByteStreamInfo

getInstance(DigestValue.DigestAlgorithm[], InputStream) - Static method in class eu.scape_project.core.model.ByteStreamInfo

getInstance(String) - Static method in class eu.scape_project.core.model.JavaDigestValue

getInstance(DigestValue.DigestAlgorithm, byte[]) - Static method in class eu.scape_project.core.model.JavaDigestValue

getInstance(DigestValue.DigestAlgorithm, String) - Static method in class eu.scape_project.core.model.JavaDigestValue

getInstance(DigestValue.DigestAlgorithm, InputStream) - Static method in class eu.scape_project.core.model.JavaDigestValue

getInstance(DigestValue.DigestAlgorithm, File) - Static method in class eu.scape_project.core.model.JavaDigestValue

getInstance() - Static method in class eu.scape_project.pc.cc.JpylyzerWrapper

getInstance(String) - Static method in class eu.scape_project.pc.cc.JpylyzerWrapper

getJavaName() - Method in enum eu.scape_project.core.api.DigestValue.DigestAlgorithm

getJpylyzerVersion() - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

getJpylyzerVersion(String) - Static method in class eu.scape_project.pc.cc.JpylyzerWrapper

Routine to check that the Jpylyzer executable exists at a path location and obtain the version (a date stamp)

getLength() - Method in class eu.scape_project.core.model.ByteStreamInfo

getLicense() - Method in class eu.scape_project.xa.tw.toolspec.Installation

Gets the value of the license property.

getManager() - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Gets the value of the manager property.

getMessageDigestAlgorithmNames() - Static method in class eu.scape_project.core.utils.DigestUtilities

getMimeType() - Method in class eu.scape_project.core.model.ByteStreamInfo

getModel() - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Gets the value of the model property.

getName() - Method in class eu.scape_project.pit.tools.Input

getName() - Method in class eu.scape_project.pit.tools.Template

getName() - Method in class eu.scape_project.pit.tools.Tool

getName() - Method in class eu.scape_project.pit.tools.Var

getName() - Method in class eu.scape_project.xa.tw.toolspec.InOutAttrs

Gets the value of the name property.

getName() - Method in class eu.scape_project.xa.tw.toolspec.Operation

Gets the value of the name property.

getName() - Method in class eu.scape_project.xa.tw.toolspec.Property

Gets the value of the name property.

getName() - Method in class eu.scape_project.xa.tw.toolspec.Service

Gets the value of the name property.

getName() - Method in class eu.scape_project.xa.tw.toolspec.Tool

Gets the value of the name property.

getName() - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Gets the value of the name property.

getNumberOfImageComponents() - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

getOperatingSystemName() - Method in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

Gets the value of the operatingSystemName property.

getOperatingSystemVersion() - Method in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

Gets the value of the operatingSystemVersion property.

getOperation() - Method in class eu.scape_project.xa.tw.toolspec.Operations

Gets the value of the operation property.

getOperations() - Method in class eu.scape_project.xa.tw.toolspec.Service

Gets the value of the operations property.

getOperations() - Method in class eu.scape_project.xa.tw.toolspec.Tool

Gets the value of the operations property.

getOtherFormat() - Method in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

Gets the value of the otherFormat property.

getOtherOperatingSystemName() - Method in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

Gets the value of the otherOperatingSystemName property.

getOtherProperties() - Method in class eu.scape_project.xa.tw.toolspec.Tool

Gets the value of the otherProperties property.

getOtherType() - Method in class eu.scape_project.xa.tw.toolspec.License

Gets the value of the otherType property.

getOutput() - Method in class eu.scape_project.pit.proc.CommandLineProcess

getOutput() - Method in class eu.scape_project.xa.tw.toolspec.Outputs

Gets the value of the output property.

getOutputs() - Method in class eu.scape_project.xa.tw.toolspec.Operation

Gets the value of the outputs property.

getOutputStream() - Method in class eu.scape_project.pit.invoke.Out

getParameter() - Method in class eu.scape_project.xa.tw.toolspec.Inputs

Gets the value of the parameter property.

getPassword() - Method in class eu.scape_project.xa.tw.toolspec.Manager

Gets the value of the password property.

getPath() - Method in class eu.scape_project.xa.tw.toolspec.Manager

Gets the value of the path property.

getPort() - Method in class eu.scape_project.xa.tw.toolspec.Ports

Gets the value of the port property.

getPorts() - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Gets the value of the ports property.

getProcessingLog() - Method in class eu.scape_project.pit.proc.CommandLineProcess

getProperty() - Method in class eu.scape_project.xa.tw.toolspec.Properties

Gets the value of the property property.

getQName() - Method in class eu.planets_project.clients.ws.PlanetsServiceExplorer

getRef() - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Gets the value of the ref property.

getRef() - Method in class eu.scape_project.xa.tw.toolspec.Deployref

Gets the value of the ref property.

getRegistryName() - Method in class eu.scape_project.xa.tw.toolspec.Format

Gets the value of the registryName property.

getSchemaVersion() - Method in class eu.scape_project.xa.tw.toolspec.Tool

Gets the value of the schemaVersion property.

getService() - Method in class eu.scape_project.xa.tw.toolspec.Services

Gets the value of the service property.

getServiceClass() - Method in class eu.planets_project.clients.ws.PlanetsServiceExplorer

getServiceDescription(URL) - Static method in class eu.planets_project.clients.ws.DiscoveryUtils

Attempts to determine the service description for the given WSDL.

getServiceDescription() - Method in class eu.planets_project.clients.ws.PlanetsServiceExplorer

getServicepackage() - Method in class eu.scape_project.xa.tw.toolspec.Service

Gets the value of the servicepackage property.

getServices() - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Gets the value of the services property.

getSid() - Method in class eu.scape_project.xa.tw.toolspec.Service

Gets the value of the sid property.

getStandardVars(Action) - Method in class eu.scape_project.pit.invoke.Processor

getStdin() - Method in class eu.scape_project.xa.tw.toolspec.Inputs

Gets the value of the stdin property.

getStdInputStream() - Method in class eu.scape_project.pit.proc.ProcessRunner

Get input stream of the process

getStdout() - Method in class eu.scape_project.xa.tw.toolspec.Outputs

Gets the value of the stdout property.

getSystemTempFolder() - Static method in class eu.scape_project.pit.util.FileUtils

Get system's JAVA temporary directory.

getTemplate() - Method in class eu.scape_project.pit.tools.ToolSpec

getTmpFile(String, String) - Static method in class eu.scape_project.pit.util.FileUtils

Get temporary file

getTool() - Method in class eu.scape_project.pit.tools.ToolSpec

getToolsbasedir() - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Gets the value of the toolsbasedir property.

getType() - Method in class eu.scape_project.pit.invoke.In

Get the type of the underlying data object

getType() - Method in class eu.scape_project.pit.invoke.Out

Get the type of the output object

getType() - Method in class eu.scape_project.pit.tools.Action

getType() - Method in class eu.scape_project.xa.tw.toolspec.License

Gets the value of the type property.

getType() - Method in class eu.scape_project.xa.tw.toolspec.Os

Gets the value of the type property.

getType() - Method in class eu.scape_project.xa.tw.toolspec.Port

Gets the value of the type property.

getType() - Method in class eu.scape_project.xa.tw.toolspec.Service

Gets the value of the type property.

getUser() - Method in class eu.scape_project.xa.tw.toolspec.Manager

Gets the value of the user property.

getUseStdin() - Method in class eu.scape_project.pit.invoke.Processor

getUseStdin() - Method in class eu.scape_project.pit.tools.Inputs

getValue() - Method in class eu.scape_project.pit.tools.Template

getValue() - Method in class eu.scape_project.pit.tools.Var

getValue() - Method in class eu.scape_project.xa.tw.toolspec.Default

Gets the value of the value property.

getValue() - Method in class eu.scape_project.xa.tw.toolspec.License

Gets the value of the value property.

getValue() - Method in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

Gets the value of the value property.

getValue() - Method in class eu.scape_project.xa.tw.toolspec.Os

Gets the value of the value property.

getValue() - Method in class eu.scape_project.xa.tw.toolspec.Port

Gets the value of the value property.

getValue() - Method in class eu.scape_project.xa.tw.toolspec.Restriction

Gets the value of the value property.

getVar() - Method in class eu.scape_project.pit.tools.Input

getVersion() - Method in class eu.scape_project.pit.tools.Tool

getVersion() - Method in class eu.scape_project.pit.tools.ToolSpec

getVersion() - Method in class eu.scape_project.xa.tw.toolspec.Format

Gets the value of the version property.

getVersion() - Method in class eu.scape_project.xa.tw.toolspec.Tool

Gets the value of the version property.

getVersion() - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Gets the value of the version property.

getVerticalResolution() - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

getVerticalSize() - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

Get the vertical (y) size of the image

getViewStatus(String) - Method in class eu.planets_project.clients.ws.CreateViewWrapper

getWsdlLocation() - Method in class eu.planets_project.clients.ws.PlanetsServiceExplorer

getXml() - Method in class eu.scape_project.pit.tools.Input

H

hashCode() - Method in class eu.scape_project.core.model.ByteStreamInfo

hashCode() - Method in class eu.scape_project.core.model.JavaDigestValue

hexStringToByteArray(String) - Static method in class eu.scape_project.core.utils.DigestUtilities

homepage - Variable in class eu.scape_project.xa.tw.toolspec.Tool

homepage - Variable in class eu.scape_project.xa.tw.toolspec.Toolspec

host - Variable in class eu.scape_project.xa.tw.toolspec.Deployment

I

id - Variable in class eu.scape_project.xa.tw.toolspec.Deployment

id - Variable in class eu.scape_project.xa.tw.toolspec.Toolspec

identifier - Variable in class eu.scape_project.xa.tw.toolspec.Deployment

identify(DigitalObject, List<Parameter>) - Method in class eu.planets_project.clients.ws.IdentifyWrapper

Identify - Interface in eu.scape_project.pit.actions

identify(URL, HashMap<String, String>) - Method in interface eu.scape_project.pit.actions.Identify

Identify - Class in eu.scape_project.pit.invoke

Identify(ToolSpec, Action) - Constructor for class eu.scape_project.pit.invoke.Identify

identify(File) - Method in class eu.scape_project.pit.invoke.Identify

IdentifyWrapper - Class in eu.planets_project.clients.ws

This is a wrapper class that upgrades all supported Identify service interfaces to the same level.

IdentifyWrapper(URL) - Constructor for class eu.planets_project.clients.ws.IdentifyWrapper

IdentifyWrapper(PlanetsServiceExplorer) - Constructor for class eu.planets_project.clients.ws.IdentifyWrapper

In - Class in eu.scape_project.pit.invoke

This class supports mapping between the input types the clients support and those supported by the tool.

In(InputStream) - Constructor for class eu.scape_project.pit.invoke.In

Constructor for InputStream based input

In(URI) - Constructor for class eu.scape_project.pit.invoke.In

Constructor for URI for the data object

In(File) - Constructor for class eu.scape_project.pit.invoke.In

Constructor for a java.io.File containing the data object

In.Type - Enum in eu.scape_project.pit.invoke

Enumeration to represent the type of data object

init() - Method in class eu.scape_project.pit.proc.CommandLineProcess

Initialise process.

InOut - Class in eu.scape_project.xa.tw.toolspec

Java class for InOut complex type.

InOut() - Constructor for class eu.scape_project.xa.tw.toolspec.InOut

InOutAttrs - Class in eu.scape_project.xa.tw.toolspec

Java class for InOutAttrs complex type.

InOutAttrs() - Constructor for class eu.scape_project.xa.tw.toolspec.InOutAttrs

Input - Class in eu.scape_project.pit.tools

Input() - Constructor for class eu.scape_project.pit.tools.Input

Input - Class in eu.scape_project.xa.tw.toolspec

Java class for Input complex type.

Input() - Constructor for class eu.scape_project.xa.tw.toolspec.Input

input - Variable in class eu.scape_project.xa.tw.toolspec.Inputs

Inputs - Class in eu.scape_project.pit.tools

Inputs() - Constructor for class eu.scape_project.pit.tools.Inputs

Inputs - Class in eu.scape_project.xa.tw.toolspec

Java class for Inputs complex type.

Inputs() - Constructor for class eu.scape_project.xa.tw.toolspec.Inputs

inputs - Variable in class eu.scape_project.xa.tw.toolspec.Operation

Installation - Class in eu.scape_project.pit.tools

Installation() - Constructor for class eu.scape_project.pit.tools.Installation

Installation - Class in eu.scape_project.xa.tw.toolspec

Declares 1 or more installation dependencies and license.

Installation() - Constructor for class eu.scape_project.xa.tw.toolspec.Installation

installation - Variable in class eu.scape_project.xa.tw.toolspec.Tool

installation - Variable in class eu.scape_project.xa.tw.toolspec.Toolspec

isDefault() - Method in class eu.scape_project.xa.tw.toolspec.Deployref

Gets the value of the default property.

isMultiple() - Method in class eu.scape_project.xa.tw.toolspec.Restriction

Gets the value of the multiple property.

isRequired() - Method in class eu.scape_project.xa.tw.toolspec.InOutAttrs

Gets the value of the required property.

isRequired() - Method in class eu.scape_project.xa.tw.toolspec.Stdin

Gets the value of the required property.

isServiceInstanciable() - Method in class eu.planets_project.clients.ws.PlanetsServiceExplorer

Attempts to instantiate a service, and so checks if the thing is essentially working.

isValid() - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

Is the image a valid JP2K?

J

JAVA_TMP - Static variable in class eu.scape_project.pit.util.FileUtils

Path to the Java System temp directory

JavaDigestValue - Class in eu.scape_project.core.model

JpylyzerWrapper - Class in eu.scape_project.pc.cc

L

license - Variable in class eu.scape_project.xa.tw.toolspec.Installation

License - Class in eu.scape_project.xa.tw.toolspec

Java class for License complex type.

License() - Constructor for class eu.scape_project.xa.tw.toolspec.License

LicenseType - Enum in eu.scape_project.xa.tw.toolspec

Java class for LicenseType.

listAvailableEndpoints() - Static method in class eu.planets_project.clients.ws.EndpointUtils

listProperties(URI) - Method in class eu.planets_project.clients.ws.CharacteriseWrapper

M

main(String[]) - Static method in class eu.planets_project.clients.ws.MigrateWrapper

main(String[]) - Static method in class eu.planets_project.ifr.core.servreg.utils.client.PlanetsCommand

main(String[]) - Static method in class eu.scape_project.pc.cc.JpylyzerWrapper

This is a simple test, note that Jpylyzer MUST be at DEFAULT_JPYLYZER_PATH for this main to work, it doesn't take a path to the exe as an arg.

main(String[]) - Static method in class eu.scape_project.pit.invoke.PitInvoker

main(String[]) - Static method in class eu.scape_project.pit.PitCommand

manager - Variable in class eu.scape_project.xa.tw.toolspec.Deployment

Manager - Class in eu.scape_project.xa.tw.toolspec

Java class for anonymous complex type.

Manager() - Constructor for class eu.scape_project.xa.tw.toolspec.Manager

MAX_BYTES_OUT - Static variable in class eu.scape_project.pit.proc.ProcessRunner

Maximum number of bytes to be collected from std out

MAX_WAIT_MILLIS - Static variable in class eu.scape_project.pit.proc.ProcessRunner

The Maximum wait time

migrate(DigitalObject, URI, URI, List<Parameter>) - Method in class eu.planets_project.clients.ws.MigrateWrapper

MigrateWrapper - Class in eu.planets_project.clients.ws

This is a wrapper class that upgrades all supported Migrate service interfaces to the same level.

MIN_QUERYTOKEN_LENGTH - Static variable in class eu.scape_project.pit.proc.CommandLineProcess

Denotes the minumim lenght of a query token

model - Variable in class eu.scape_project.xa.tw.toolspec.Toolspec

multiple - Variable in class eu.scape_project.xa.tw.toolspec.Restriction

N

name - Variable in class eu.scape_project.xa.tw.toolspec.InOutAttrs

name - Variable in class eu.scape_project.xa.tw.toolspec.Operation

name - Variable in class eu.scape_project.xa.tw.toolspec.Property

name - Variable in class eu.scape_project.xa.tw.toolspec.Service

name - Variable in class eu.scape_project.xa.tw.toolspec.Tool

name - Variable in class eu.scape_project.xa.tw.toolspec.Toolspec

NS - Static variable in class eu.scape_project.pit.tools.ToolSpec

The namespace for the toolspec

O

ObjectFactory - Class in eu.scape_project.xa.tw.toolspec

This object contains factory methods for each Java content interface and Java element interface generated in the eu.scape_project.xa.tw.toolspec package.

ObjectFactory() - Constructor for class eu.scape_project.xa.tw.toolspec.ObjectFactory

Create a new ObjectFactory that can be used to create new instances of schema derived classes for package: eu.scape_project.xa.tw.toolspec

OperatingSystemDependency - Class in eu.scape_project.xa.tw.toolspec

Declares an operating system dependency.

OperatingSystemDependency() - Constructor for class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

operatingSystemName - Variable in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

OperatingSystemName - Enum in eu.scape_project.xa.tw.toolspec

Java class for OperatingSystemName.

operatingSystemVersion - Variable in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

Operation - Interface in eu.scape_project.pit.actions

Operation - Class in eu.scape_project.xa.tw.toolspec

Java class for Operation complex type.

Operation() - Constructor for class eu.scape_project.xa.tw.toolspec.Operation

operation - Variable in class eu.scape_project.xa.tw.toolspec.Operations

Operations - Class in eu.scape_project.xa.tw.toolspec

Declares 1 or more operations provided by the tool.

Operations() - Constructor for class eu.scape_project.xa.tw.toolspec.Operations

operations - Variable in class eu.scape_project.xa.tw.toolspec.Service

operations - Variable in class eu.scape_project.xa.tw.toolspec.Tool

Os - Class in eu.scape_project.xa.tw.toolspec

Java class for anonymous complex type.

Os() - Constructor for class eu.scape_project.xa.tw.toolspec.Os

otherFormat - Variable in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

otherOperatingSystemName - Variable in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

otherProperties - Variable in class eu.scape_project.xa.tw.toolspec.Tool

otherType - Variable in class eu.scape_project.xa.tw.toolspec.License

Out - Class in eu.scape_project.pit.invoke

Out(OutputStream) - Constructor for class eu.scape_project.pit.invoke.Out

Constructor for output stream output

Out(URI) - Constructor for class eu.scape_project.pit.invoke.Out

Constructor for ouput to a URI

Out(File) - Constructor for class eu.scape_project.pit.invoke.Out

Constructor for file based output

Out.Type - Enum in eu.scape_project.pit.invoke

Enumeration identifying the output type

Output - Class in eu.scape_project.xa.tw.toolspec

Java class for Output complex type.

Output() - Constructor for class eu.scape_project.xa.tw.toolspec.Output

output - Variable in class eu.scape_project.xa.tw.toolspec.Outputs

outputs - Variable in class eu.scape_project.xa.tw.toolspec.Operation

Outputs - Class in eu.scape_project.xa.tw.toolspec

Java class for Outputs complex type.

Outputs() - Constructor for class eu.scape_project.xa.tw.toolspec.Outputs

P

parameter - Variable in class eu.scape_project.xa.tw.toolspec.Inputs

Parameter - Class in eu.scape_project.xa.tw.toolspec

Java class for Parameter complex type.

Parameter() - Constructor for class eu.scape_project.xa.tw.toolspec.Parameter

password - Variable in class eu.scape_project.xa.tw.toolspec.Manager

path - Variable in class eu.scape_project.xa.tw.toolspec.Manager

PathwaySpec - Class in eu.scape_project.pit.tools

PathwaySpec() - Constructor for class eu.scape_project.pit.tools.PathwaySpec

PitCommand - Class in eu.scape_project.pit

PitCommand() - Constructor for class eu.scape_project.pit.PitCommand

PitInvoker - Class in eu.scape_project.pit.invoke

PitInvoker() - Constructor for class eu.scape_project.pit.invoke.PitInvoker

PlanetsCommand - Class in eu.planets_project.ifr.core.servreg.utils.client

A really simple class that allows a Planets Service to be invoked from the command line.

PlanetsCommand() - Constructor for class eu.planets_project.ifr.core.servreg.utils.client.PlanetsCommand

PlanetsServiceExplorer - Class in eu.planets_project.clients.ws

PlanetsServiceExplorer(URL) - Constructor for class eu.planets_project.clients.ws.PlanetsServiceExplorer

Probes for the QName on construction.

Port - Class in eu.scape_project.xa.tw.toolspec

Java class for anonymous complex type.

Port() - Constructor for class eu.scape_project.xa.tw.toolspec.Port

port - Variable in class eu.scape_project.xa.tw.toolspec.Ports

ports - Variable in class eu.scape_project.xa.tw.toolspec.Deployment

Ports - Class in eu.scape_project.xa.tw.toolspec

Java class for anonymous complex type.

Ports() - Constructor for class eu.scape_project.xa.tw.toolspec.Ports

Processor - Class in eu.scape_project.pit.invoke

Processor(ToolSpec, Action) - Constructor for class eu.scape_project.pit.invoke.Processor

Constructor from a toolspec and an action

ProcessRunner - Class in eu.scape_project.pit.proc

ProcessRunner class.

ProcessRunner() - Constructor for class eu.scape_project.pit.proc.ProcessRunner

Constructor which initialises the process builder

ProcessRunner(List<String>) - Constructor for class eu.scape_project.pit.proc.ProcessRunner

Constructor which takes the command list

Properties - Class in eu.scape_project.xa.tw.toolspec

Java class for Properties complex type.

Properties() - Constructor for class eu.scape_project.xa.tw.toolspec.Properties

property - Variable in class eu.scape_project.xa.tw.toolspec.Properties

Property - Class in eu.scape_project.xa.tw.toolspec

Java class for Property complex type.

Property() - Constructor for class eu.scape_project.xa.tw.toolspec.Property

R

ref - Variable in class eu.scape_project.xa.tw.toolspec.Deployment

ref - Variable in class eu.scape_project.xa.tw.toolspec.Deployref

registryName - Variable in class eu.scape_project.xa.tw.toolspec.Format

replaceAll(String[], HashMap<String, String>) - Method in class eu.scape_project.pit.invoke.Processor

required - Variable in class eu.scape_project.xa.tw.toolspec.InOutAttrs

required - Variable in class eu.scape_project.xa.tw.toolspec.Stdin

Restriction - Class in eu.scape_project.xa.tw.toolspec

Java class for anonymous complex type.

Restriction() - Constructor for class eu.scape_project.xa.tw.toolspec.Restriction

run(HashMap<String, String>) - Method in interface eu.scape_project.pit.actions.Operation

run() - Method in class eu.scape_project.pit.proc.ProcessRunner

Run the process

runCommand(String[]) - Method in class eu.scape_project.pit.invoke.Processor

S

SCAPE_URI_SCHEME - Static variable in class eu.scape_project.core.Constants

SCAPE URI scheme prefix

schemaVersion - Variable in class eu.scape_project.xa.tw.toolspec.Tool

Service - Class in eu.scape_project.xa.tw.toolspec

Java class for anonymous complex type.

Service() - Constructor for class eu.scape_project.xa.tw.toolspec.Service

service - Variable in class eu.scape_project.xa.tw.toolspec.Services

servicepackage - Variable in class eu.scape_project.xa.tw.toolspec.Service

Services - Class in eu.scape_project.xa.tw.toolspec

Java class for anonymous complex type.

Services() - Constructor for class eu.scape_project.xa.tw.toolspec.Services

services - Variable in class eu.scape_project.xa.tw.toolspec.Toolspec

setAccessdir(String) - Method in class eu.scape_project.xa.tw.toolspec.Dataexchange

Sets the value of the accessdir property.

setAccessurl(String) - Method in class eu.scape_project.xa.tw.toolspec.Dataexchange

Sets the value of the accessurl property.

setActions(List<Action>) - Method in class eu.scape_project.pit.tools.ToolSpec

setClireplacement(String) - Method in class eu.scape_project.xa.tw.toolspec.Default

Sets the value of the clireplacement property.

setCommand(String) - Method in class eu.scape_project.pit.tools.Action

setCommand(String) - Method in class eu.scape_project.xa.tw.toolspec.Operation

Sets the value of the command property.

setCommandList(List<String>) - Method in class eu.scape_project.pit.proc.ProcessRunner

Set the command list that will be passed to the process builder

setContent(String) - Method in class eu.scape_project.xa.tw.toolspec.Format

Sets the value of the content property.

setContent(String) - Method in class eu.scape_project.xa.tw.toolspec.Property

Sets the value of the content property.

setContextpathprefix(String) - Method in class eu.scape_project.xa.tw.toolspec.Service

Sets the value of the contextpathprefix property.

setDataexchange(Dataexchange) - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Sets the value of the dataexchange property.

setDefault(String) - Method in class eu.scape_project.pit.tools.Input

setDefault(boolean) - Method in class eu.scape_project.xa.tw.toolspec.Deployref

Sets the value of the default property.

setDefaultValue(String) - Method in class eu.scape_project.xa.tw.toolspec.Input

Sets the value of the defaultValue property.

setDefaultValue(String) - Method in class eu.scape_project.xa.tw.toolspec.Parameter

Sets the value of the defaultValue property.

setDeployments(Deployments) - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Sets the value of the deployments property.

setDeployto(Deployto) - Method in class eu.scape_project.xa.tw.toolspec.Service

Sets the value of the deployto property.

setDescription(String) - Method in class eu.scape_project.xa.tw.toolspec.InOut

Sets the value of the description property.

setDescription(String) - Method in class eu.scape_project.xa.tw.toolspec.Operation

Sets the value of the description property.

setDescription(String) - Method in class eu.scape_project.xa.tw.toolspec.Service

Sets the value of the description property.

setEnv(List<Var>) - Method in class eu.scape_project.pit.tools.ToolSpec

setExtension(String) - Method in class eu.scape_project.xa.tw.toolspec.Output

Sets the value of the extension property.

setFormat(DependencyFormat) - Method in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

Sets the value of the format property.

setFormats(List<PathwaySpec>) - Method in class eu.scape_project.pit.tools.Action

setHomepage(String) - Method in class eu.scape_project.xa.tw.toolspec.Tool

Sets the value of the homepage property.

setHomepage(String) - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Sets the value of the homepage property.

setHost(String) - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Sets the value of the host property.

setId(String) - Method in class eu.scape_project.pit.tools.Action

setId(String) - Method in class eu.scape_project.pit.tools.ToolSpec

setId(String) - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Sets the value of the id property.

setId(String) - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Sets the value of the id property.

setIdentifier(String) - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Sets the value of the identifier property.

setInputs(Inputs) - Method in class eu.scape_project.pit.tools.Action

setInputs(List<Input>) - Method in class eu.scape_project.pit.tools.Inputs

setInputs(Inputs) - Method in class eu.scape_project.pit.tools.ToolSpec

setInputs(Inputs) - Method in class eu.scape_project.xa.tw.toolspec.Operation

Sets the value of the inputs property.

setInstallation(Installation) - Method in class eu.scape_project.pit.tools.Tool

setInstallation(Installation) - Method in class eu.scape_project.xa.tw.toolspec.Tool

Sets the value of the installation property.

setInstallation(Installation) - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Sets the value of the installation property.

setLicense(License) - Method in class eu.scape_project.xa.tw.toolspec.Installation

Sets the value of the license property.

setManager(Manager) - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Sets the value of the manager property.

setModel(double) - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Sets the value of the model property.

setMultiple(Boolean) - Method in class eu.scape_project.xa.tw.toolspec.Restriction

Sets the value of the multiple property.

setName(String) - Method in class eu.scape_project.pit.tools.Input

setName(String) - Method in class eu.scape_project.pit.tools.Template

setName(String) - Method in class eu.scape_project.pit.tools.Tool

setName(String) - Method in class eu.scape_project.pit.tools.Var

setName(String) - Method in class eu.scape_project.xa.tw.toolspec.InOutAttrs

Sets the value of the name property.

setName(String) - Method in class eu.scape_project.xa.tw.toolspec.Operation

Sets the value of the name property.

setName(String) - Method in class eu.scape_project.xa.tw.toolspec.Property

Sets the value of the name property.

setName(String) - Method in class eu.scape_project.xa.tw.toolspec.Service

Sets the value of the name property.

setName(String) - Method in class eu.scape_project.xa.tw.toolspec.Tool

Sets the value of the name property.

setName(String) - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Sets the value of the name property.

setOperatingSystemName(OperatingSystemName) - Method in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

Sets the value of the operatingSystemName property.

setOperatingSystemVersion(String) - Method in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

Sets the value of the operatingSystemVersion property.

setOperations(Operations) - Method in class eu.scape_project.xa.tw.toolspec.Service

Sets the value of the operations property.

setOperations(Operations) - Method in class eu.scape_project.xa.tw.toolspec.Tool

Sets the value of the operations property.

setOtherFormat(String) - Method in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

Sets the value of the otherFormat property.

setOtherOperatingSystemName(String) - Method in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

Sets the value of the otherOperatingSystemName property.

setOtherProperties(Properties) - Method in class eu.scape_project.xa.tw.toolspec.Tool

Sets the value of the otherProperties property.

setOtherType(String) - Method in class eu.scape_project.xa.tw.toolspec.License

Sets the value of the otherType property.

setOutputs(Outputs) - Method in class eu.scape_project.xa.tw.toolspec.Operation

Sets the value of the outputs property.

setPassword(String) - Method in class eu.scape_project.xa.tw.toolspec.Manager

Sets the value of the password property.

setPath(String) - Method in class eu.scape_project.xa.tw.toolspec.Manager

Sets the value of the path property.

setPorts(Ports) - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Sets the value of the ports property.

setProcessDir(String) - Method in class eu.scape_project.pit.proc.ProcessRunner

Initial dir of the process.

setProcessInputStream(InputStream) - Method in class eu.scape_project.pit.proc.ProcessRunner

Set process input stream

setRef(String) - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Sets the value of the ref property.

setRef(Object) - Method in class eu.scape_project.xa.tw.toolspec.Deployref

Sets the value of the ref property.

setRegistryName(String) - Method in class eu.scape_project.xa.tw.toolspec.Format

Sets the value of the registryName property.

setRequired(Boolean) - Method in class eu.scape_project.xa.tw.toolspec.InOutAttrs

Sets the value of the required property.

setRequired(Boolean) - Method in class eu.scape_project.xa.tw.toolspec.Stdin

Sets the value of the required property.

setSchemaVersion(BigDecimal) - Method in class eu.scape_project.xa.tw.toolspec.Tool

Sets the value of the schemaVersion property.

setServicepackage(String) - Method in class eu.scape_project.xa.tw.toolspec.Service

Sets the value of the servicepackage property.

setServices(Services) - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Sets the value of the services property.

setSid(String) - Method in class eu.scape_project.xa.tw.toolspec.Service

Sets the value of the sid property.

setStdin(Stdin) - Method in class eu.scape_project.xa.tw.toolspec.Inputs

Sets the value of the stdin property.

setStdout(Out) - Method in class eu.scape_project.pit.invoke.Processor

setStdout(Stdout) - Method in class eu.scape_project.xa.tw.toolspec.Outputs

Sets the value of the stdout property.

setTemplate(List<Template>) - Method in class eu.scape_project.pit.tools.ToolSpec

setTool(Tool) - Method in class eu.scape_project.pit.tools.ToolSpec

setToolsbasedir(String) - Method in class eu.scape_project.xa.tw.toolspec.Deployment

Sets the value of the toolsbasedir property.

setType(String) - Method in class eu.scape_project.pit.tools.Action

setType(LicenseType) - Method in class eu.scape_project.xa.tw.toolspec.License

Sets the value of the type property.

setType(String) - Method in class eu.scape_project.xa.tw.toolspec.Os

Sets the value of the type property.

setType(String) - Method in class eu.scape_project.xa.tw.toolspec.Port

Sets the value of the type property.

setType(String) - Method in class eu.scape_project.xa.tw.toolspec.Service

Sets the value of the type property.

setUser(String) - Method in class eu.scape_project.xa.tw.toolspec.Manager

Sets the value of the user property.

setUseStdin(Boolean) - Method in class eu.scape_project.pit.tools.Inputs

setValue(String) - Method in class eu.scape_project.pit.tools.Template

setValue(String) - Method in class eu.scape_project.pit.tools.Var

setValue(String) - Method in class eu.scape_project.xa.tw.toolspec.Default

Sets the value of the value property.

setValue(String) - Method in class eu.scape_project.xa.tw.toolspec.License

Sets the value of the value property.

setValue(String) - Method in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

Sets the value of the value property.

setValue(String) - Method in class eu.scape_project.xa.tw.toolspec.Os

Sets the value of the value property.

setValue(int) - Method in class eu.scape_project.xa.tw.toolspec.Port

Sets the value of the value property.

setVar(String) - Method in class eu.scape_project.pit.tools.Input

setVersion(Version) - Method in class eu.scape_project.pit.tools.Tool

setVersion(Version) - Method in class eu.scape_project.pit.tools.ToolSpec

setVersion(String) - Method in class eu.scape_project.xa.tw.toolspec.Format

Sets the value of the version property.

setVersion(String) - Method in class eu.scape_project.xa.tw.toolspec.Tool

Sets the value of the version property.

setVersion(String) - Method in class eu.scape_project.xa.tw.toolspec.Toolspec

Sets the value of the version property.

setXml(List<Element>) - Method in class eu.scape_project.pit.tools.Input

sid - Variable in class eu.scape_project.xa.tw.toolspec.Service

startElement(String, String, String, Attributes) - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

stdin - Variable in class eu.scape_project.xa.tw.toolspec.Inputs

Stdin - Class in eu.scape_project.xa.tw.toolspec

Java class for Stdin complex type.

Stdin() - Constructor for class eu.scape_project.xa.tw.toolspec.Stdin

stdout - Variable in class eu.scape_project.xa.tw.toolspec.Outputs

Stdout - Class in eu.scape_project.xa.tw.toolspec

Java class for Stdout complex type.

Stdout() - Constructor for class eu.scape_project.xa.tw.toolspec.Stdout

StringUtils - Class in eu.scape_project.pit.util

String utilities

substituteTemplates(Action) - Method in class eu.scape_project.pit.invoke.Processor

T

Template - Class in eu.scape_project.pit.tools

Template() - Constructor for class eu.scape_project.pit.tools.Template

Tool - Class in eu.scape_project.pit.tools

Tool() - Constructor for class eu.scape_project.pit.tools.Tool

For JAXB

Tool - Class in eu.scape_project.xa.tw.toolspec

Describes a command line tool.

Tool() - Constructor for class eu.scape_project.xa.tw.toolspec.Tool

toolsbasedir - Variable in class eu.scape_project.xa.tw.toolspec.Deployment

ToolSpec - Class in eu.scape_project.pit.tools

ToolSpec() - Constructor for class eu.scape_project.pit.tools.ToolSpec

Toolspec - Class in eu.scape_project.xa.tw.toolspec

Java class for anonymous complex type.

Toolspec() - Constructor for class eu.scape_project.xa.tw.toolspec.Toolspec

TOOLSPEC_SCHEMA_RESOURCE_PATH - Static variable in class eu.scape_project.core.Constants

Path to the toolspec schema in the resources

ToolSpecNotFoundException - Exception in eu.scape_project.pit.invoke

ToolSpecNotFoundException() - Constructor for exception eu.scape_project.pit.invoke.ToolSpecNotFoundException

ToolSpecNotFoundException(String, Throwable) - Constructor for exception eu.scape_project.pit.invoke.ToolSpecNotFoundException

ToolSpecNotFoundException(String) - Constructor for exception eu.scape_project.pit.invoke.ToolSpecNotFoundException

ToolSpecNotFoundException(Throwable) - Constructor for exception eu.scape_project.pit.invoke.ToolSpecNotFoundException

toString() - Method in class eu.scape_project.core.model.ByteStreamInfo

toString() - Method in class eu.scape_project.core.model.JavaDigestValue

toString() - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

toXml() - Method in class eu.scape_project.core.model.ByteStreamInfo

toXml() - Method in class eu.scape_project.core.model.JavaDigestValue

ts - Variable in class eu.scape_project.pit.invoke.Processor

type - Variable in class eu.scape_project.xa.tw.toolspec.License

type - Variable in class eu.scape_project.xa.tw.toolspec.Os

type - Variable in class eu.scape_project.xa.tw.toolspec.Port

type - Variable in class eu.scape_project.xa.tw.toolspec.Service

U

urlToFile(URL, String) - Static method in class eu.scape_project.pit.util.FileUtils

Read file of URL into file.

user - Variable in class eu.scape_project.xa.tw.toolspec.Manager

V

validateJp2kFile(String) - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

validateJp2kFile(File) - Method in class eu.scape_project.pc.cc.JpylyzerWrapper

value - Variable in class eu.scape_project.xa.tw.toolspec.Default

value() - Method in enum eu.scape_project.xa.tw.toolspec.DependencyFormat

value - Variable in class eu.scape_project.xa.tw.toolspec.License

value() - Method in enum eu.scape_project.xa.tw.toolspec.LicenseType

value - Variable in class eu.scape_project.xa.tw.toolspec.OperatingSystemDependency

value() - Method in enum eu.scape_project.xa.tw.toolspec.OperatingSystemName

value - Variable in class eu.scape_project.xa.tw.toolspec.Os

value - Variable in class eu.scape_project.xa.tw.toolspec.Port

value - Variable in class eu.scape_project.xa.tw.toolspec.Restriction

valueOf(String) - Static method in enum eu.scape_project.core.api.DigestValue.DigestAlgorithm

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum eu.scape_project.pit.invoke.In.Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum eu.scape_project.pit.invoke.Out.Type

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum eu.scape_project.xa.tw.toolspec.DependencyFormat

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum eu.scape_project.xa.tw.toolspec.LicenseType

Returns the enum constant of this type with the specified name.

valueOf(String) - Static method in enum eu.scape_project.xa.tw.toolspec.OperatingSystemName

Returns the enum constant of this type with the specified name.

values() - Static method in enum eu.scape_project.core.api.DigestValue.DigestAlgorithm

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum eu.scape_project.pit.invoke.In.Type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum eu.scape_project.pit.invoke.Out.Type

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum eu.scape_project.xa.tw.toolspec.DependencyFormat

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum eu.scape_project.xa.tw.toolspec.LicenseType

Returns an array containing the constants of this enum type, in the order they are declared.

values() - Static method in enum eu.scape_project.xa.tw.toolspec.OperatingSystemName

Returns an array containing the constants of this enum type, in the order they are declared.

Var - Class in eu.scape_project.pit.tools

Var() - Constructor for class eu.scape_project.pit.tools.Var

Version - Class in eu.scape_project.pit.tools

Version() - Constructor for class eu.scape_project.pit.tools.Version

version - Variable in class eu.scape_project.xa.tw.toolspec.Format

version - Variable in class eu.scape_project.xa.tw.toolspec.Tool

version - Variable in class eu.scape_project.xa.tw.toolspec.Toolspec

W

WAIT - Static variable in class eu.scape_project.pit.proc.ProcessRunner

Time to wait

_

_default - Variable in class eu.scape_project.xa.tw.toolspec.Deployref

A B C D E F G H I J L M N O P R S T U V W _